Function reference
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GlmmSeq-class - An S4 class to define the glmmSeq output
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fcPlot() - Plotly or ggplot fold change plots
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ggmodelPlot() - Mixed model effects plot using ggplot2
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glmmQvals() - Glmm Sequencing qvalues
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glmmRefit() - Refit mixed effects model
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glmmSeq() - GLMM with negative binomial distribution for sequencing count data
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lmmSeq-class - An S4 class to define the lmmSeq output
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lmmSeq() - Linear mixed models for data matrix
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maPlot() - MA plots
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metadata - Minimal metadata from PEAC
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modelPlot() - Mixed model effects plot
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summary(<lmmSeq>)summary(<GlmmSeq>) - Summarise a 'glmmSeq'/'lmmSeq' object
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tpm - TPM count data from PEAC