Skip to contents

Summarise a 'glmmSeq'/'lmmSeq' object

Source: R/summary_lmmSeq.R
summary.lmmSeq.Rd

Summarise results from glmmSeq or lmmSeq analysis

Usage

# S3 method for lmmSeq
summary(object, gene = NULL, digits = max(3L, getOption("digits") - 3L), ...)

# S3 method for GlmmSeq
summary(object, gene = NULL, ...)

Arguments

object

an object of class "GlmmSeq" or "lmmSeq"

gene

an optional character value specifying a single gene whose results are summarised

digits

integer, used for number formatting

...

arguments to be passed to other methods

Value

If gene=NULL a dataframe of results for all genes is returned. Otherwise the output of GLMM or LMM model results for a single gene including coefficients, test statistics, p-values is printed and the dataframe for all genes is returned invisibly.

See also

glmmSeq(), lmmSeq()